Index: src/org/jboss/tools/ws/jaxrs/core/internal/metamodel/builder/JaxrsElementChangedProcessor.java
===================================================================
--- src/org/jboss/tools/ws/jaxrs/core/internal/metamodel/builder/JaxrsElementChangedProcessor.java	(revision 37078)
+++ src/org/jboss/tools/ws/jaxrs/core/internal/metamodel/builder/JaxrsElementChangedProcessor.java	(working copy)
@@ -54,7 +54,6 @@
 	}
 
 	private List<JaxrsEndpointChangedEvent> processEvent(final JaxrsElementChangedEvent event) throws CoreException {
-		Logger.debug("Processing JAX-RS change {}", event);
 		final IJaxrsElement<?> element = event.getElement();
 		final EnumElementKind elementKind = element.getElementKind();
 		final int flags = event.getFlags();
Index: src/org/jboss/tools/ws/jaxrs/core/internal/metamodel/builder/JaxrsMetamodelBuildJob.java
===================================================================
--- src/org/jboss/tools/ws/jaxrs/core/internal/metamodel/builder/JaxrsMetamodelBuildJob.java	(revision 37078)
+++ src/org/jboss/tools/ws/jaxrs/core/internal/metamodel/builder/JaxrsMetamodelBuildJob.java	(working copy)
@@ -3,6 +3,7 @@
  */
 package org.jboss.tools.ws.jaxrs.core.internal.metamodel.builder;
 
+import java.util.ArrayList;
 import java.util.List;
 
 import org.eclipse.core.resources.IProject;
@@ -19,7 +20,10 @@
 import org.eclipse.jdt.internal.core.JavaElementDelta;
 import org.jboss.tools.ws.jaxrs.core.internal.metamodel.domain.JaxrsMetamodel;
 import org.jboss.tools.ws.jaxrs.core.internal.utils.Logger;
+import org.jboss.tools.ws.jaxrs.core.metamodel.IJaxrsEndpoint;
 import org.jboss.tools.ws.jaxrs.core.pubsub.EventService;
+import static org.eclipse.jdt.core.IJavaElementDelta.REMOVED;
+
 
 /** @author xcoulon */
 @SuppressWarnings("restriction")
@@ -43,7 +47,16 @@
 		if (metamodel == null) {
 			JaxrsMetamodel.create(javaProject);
 		} else if (requiresReset) {
+			// copying the references to the endpoints into a new list before it is reset
+			final List<IJaxrsEndpoint> allEndpoints = new ArrayList<IJaxrsEndpoint>(metamodel.getAllEndpoints());
 			metamodel.reset();
+			// now, notifying of the actual removals to the UI
+			for (IJaxrsEndpoint endpoint : allEndpoints) {
+				JaxrsEndpointChangedEvent change = new JaxrsEndpointChangedEvent(endpoint, REMOVED);
+				Logger.debug(change.toString());
+				EventService.getInstance().publish(change);
+			}
+
 		}
 	}
 
@@ -74,13 +87,13 @@
 					events, progressMonitor);
 			final List<JaxrsEndpointChangedEvent> jaxrsEndpointChanges = jaxrsElementChangedProcessor.processEvents(
 					jaxrsElementChanges, progressMonitor);
-			if(jaxrsEndpointChanges == null || jaxrsEndpointChanges.isEmpty()) {
+			if (jaxrsEndpointChanges == null || jaxrsEndpointChanges.isEmpty()) {
 				Logger.debug("No JAX-RS change to publish to the UI");
 			} else {
-			for (JaxrsEndpointChangedEvent change : jaxrsEndpointChanges) {
-				Logger.debug(change.toString());
-				EventService.getInstance().publish(change);
-			}
+				for (JaxrsEndpointChangedEvent change : jaxrsEndpointChanges) {
+					Logger.debug(change.toString());
+					EventService.getInstance().publish(change);
+				}
 			}
 		} catch (Throwable e) {
 			Logger.error("Failed to build or refresh the JAX-RS metamodel", e);
Index: src/org/jboss/tools/ws/jaxrs/core/internal/metamodel/builder/JaxrsElementChangedEvent.java
===================================================================
--- src/org/jboss/tools/ws/jaxrs/core/internal/metamodel/builder/JaxrsElementChangedEvent.java	(revision 37078)
+++ src/org/jboss/tools/ws/jaxrs/core/internal/metamodel/builder/JaxrsElementChangedEvent.java	(working copy)
@@ -90,7 +90,9 @@
 	@Override
 	public String toString() {
 		StringBuilder s = new StringBuilder();
-		s.append("JaxrsElementChange: [").append(ConstantUtils.getStaticFieldName(IJavaElementDelta.class, deltaKind))
+		s.append("JaxrsElementChange: [")
+				.append(ConstantUtils.toCamelCase(element.getElementKind().toString()))
+				.append(" ").append(ConstantUtils.getStaticFieldName(IJavaElementDelta.class, deltaKind))
 				.append("] ").append(element.getJavaElement().getElementName());
 
 		try {
Index: src/org/jboss/tools/ws/jaxrs/core/internal/metamodel/domain/JaxrsMetamodel.java
===================================================================
--- src/org/jboss/tools/ws/jaxrs/core/internal/metamodel/domain/JaxrsMetamodel.java	(revision 37078)
+++ src/org/jboss/tools/ws/jaxrs/core/internal/metamodel/domain/JaxrsMetamodel.java	(working copy)
@@ -385,6 +385,7 @@
 		this.providers.clear();
 		this.resources.clear();
 		this.elementsIndex.clear();
+		this.endpoints.clear();
 	}
 
 	/**
Index: src/org/jboss/tools/ws/jaxrs/core/internal/utils/ConstantUtils.java
===================================================================
--- src/org/jboss/tools/ws/jaxrs/core/internal/utils/ConstantUtils.java	(revision 37078)
+++ src/org/jboss/tools/ws/jaxrs/core/internal/utils/ConstantUtils.java	(working copy)
@@ -52,7 +52,7 @@
 		return result;
 	}
 
-	static String toCamelCase(String s) {
+	public static String toCamelCase(String s) {
 		String[] parts = s.split("_");
 		String camelCaseString = "";
 		for (String part : parts) {
Index: src/org/jboss/tools/ws/jaxrs/core/internal/utils/Logger.java
===================================================================
--- src/org/jboss/tools/ws/jaxrs/core/internal/utils/Logger.java	(revision 37078)
+++ src/org/jboss/tools/ws/jaxrs/core/internal/utils/Logger.java	(working copy)
@@ -119,10 +119,7 @@
 	 *            the message to trace.
 	 */
 	public static void debug(final String message) {
-		String debugOption = Platform.getDebugOption(DEBUG);
-		if (JBossJaxrsCorePlugin.getDefault().isDebugging() && "true".equalsIgnoreCase(debugOption)) {
-			System.out.println("[" + Thread.currentThread().getName() + "] " + message);
-		}
+		debug(message, (Object[])null);
 
 	}
 
@@ -139,10 +136,11 @@
 		String valuedMessage = message;
 		if (JBossJaxrsCorePlugin.getDefault() != null && JBossJaxrsCorePlugin.getDefault().isDebugging()
 				&& "true".equalsIgnoreCase(debugOption)) {
-			for (Object item : items) {
-				valuedMessage = valuedMessage.replaceFirst("\\{\\}", (item != null ? item.toString() : "null"));
+			if (items != null) {
+				for (Object item : items) {
+					valuedMessage = valuedMessage.replaceFirst("\\{\\}", (item != null ? item.toString() : "null"));
+				}
 			}
-
 			System.out.println(dateFormatter.get().format(new Date()) + " [" + Thread.currentThread().getName() + "] "
 					+ valuedMessage);
 		}