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Steps to Reproduce:

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1. Clone https://github.com/windup/jee-migration-example-app and update to https://github.com/windup/jee-migration-example-app/pull/1
2. Import Existing Maven project from the root folder of above example into Eclipse.
3. It should result with 4 projects in the workspace.
4. Switch to Windup perspective and create run configuration with jee-example-app, jee-example-service and jee-example-web projects. Select a migration path and check Generate Report option on Options tab
5. Click on Run button

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1. Clone https://github.com/windup/jee-migration-example-app and update to https://github.com/windup/jee-migration-example-app/pull/1 2. Import Existing Maven project from the root folder of above example into Eclipse. 3. It should result with 4 projects in the workspace. 4. Switch to Windup perspective and create run configuration with jee-example-app, jee-example-service and jee-example-web projects. Select a migration path and check Generate Report option on Options tab 5. Click on Run button

Windup eclipse plugin generates only one of 3 project report on sources example jee-example-app imported into Eclipse workspace from https://github.com/windup/jee-migration-example-app/pull/1