Preloading the cache leads to duplicate (multiple) results from queries

Duplicate (multiple) results from queries.
We are using Infinispan 5.0.0.CR3 and our cache has a JdbcStringBasedCacheStore loader with preload="true".

When reaching the QueryInterceptor (see StackTrace below) entry.isCreated() returns true.

ReadCommittedEntry(a44130){
key=0eebcb5b-d581-49ec-8e49-565a8f134b4c,
value=

{objectID=0eebcb5b-d581-49ec-8e49-565a8f134b4c, street=Street 66}

,
oldValue=null,
isCreated=true,
isChanged=true,
isRemoved=false,
isValid=true
}

so the QueryInterceptor adds the entry to the index again instead of just updating the index.

public Object visitPutKeyValueCommand(InvocationContext ctx, PutKeyValueCommand command) throws Throwable {

// This method will get the put() calls on the cache and then send them into Lucene once it's successful.
// do the actual put first.
Object toReturn = invokeNextInterceptor(ctx, command);

if (shouldModifyIndexes(ctx)) {
// First making a check to see if the key is already in the cache or not. If it isn't we can add the key no problem,
// otherwise we need to be updating the indexes as opposed to simply adding to the indexes.
Object key = command.getKey();
Object value = extractValue(command.getValue());
updateKnownTypesIfNeeded( value );
CacheEntry entry = ctx.lookupEntry(key);

// New entry so we will add it to the indexes.
if(entry.isCreated())

{ log.debug("Entry is created"); >>>> addToIndexes(value, extractValue(key)); }

else

{ // This means that the entry is just modified so we need to update the indexes and not add to them. log.debug("Entry is changed"); updateIndexes(value, extractValue(key)); }

}
return toReturn;
}

Thread [main] (Suspended)
LocalQueryInterceptor(QueryInterceptor).visitPutKeyValueCommand(InvocationContext, PutKeyValueCommand) line: 98
PutKeyValueCommand.acceptVisitor(InvocationContext, Visitor) line: 77
LockingInterceptor(CommandInterceptor).invokeNextInterceptor(InvocationContext, VisitableCommand) line: 119
LockingInterceptor.visitPutKeyValueCommand(InvocationContext, PutKeyValueCommand) line: 294
PutKeyValueCommand.acceptVisitor(InvocationContext, Visitor) line: 77
CacheStoreInterceptor(CommandInterceptor).invokeNextInterceptor(InvocationContext, VisitableCommand) line: 119
CacheStoreInterceptor.visitPutKeyValueCommand(InvocationContext, PutKeyValueCommand) line: 204
PutKeyValueCommand.acceptVisitor(InvocationContext, Visitor) line: 77
CacheLoaderInterceptor(CommandInterceptor).invokeNextInterceptor(InvocationContext, VisitableCommand) line: 119
CacheLoaderInterceptor.visitPutKeyValueCommand(InvocationContext, PutKeyValueCommand) line: 82
PutKeyValueCommand.acceptVisitor(InvocationContext, Visitor) line: 77
NotificationInterceptor(CommandInterceptor).invokeNextInterceptor(InvocationContext, VisitableCommand) line: 119
NotificationInterceptor(CommandInterceptor).handleDefault(InvocationContext, VisitableCommand) line: 133
NotificationInterceptor(AbstractVisitor).visitPutKeyValueCommand(InvocationContext, PutKeyValueCommand) line: 60
PutKeyValueCommand.acceptVisitor(InvocationContext, Visitor) line: 77
TxInterceptor(CommandInterceptor).invokeNextInterceptor(InvocationContext, VisitableCommand) line: 119
TxInterceptor.enlistWriteAndInvokeNext(InvocationContext, WriteCommand) line: 204
TxInterceptor.visitPutKeyValueCommand(InvocationContext, PutKeyValueCommand) line: 152
PutKeyValueCommand.acceptVisitor(InvocationContext, Visitor) line: 77
InvocationContextInterceptor(CommandInterceptor).invokeNextInterceptor(InvocationContext, VisitableCommand) line: 119
InvocationContextInterceptor.handleAll(InvocationContext, VisitableCommand) line: 96
InvocationContextInterceptor.handleDefault(InvocationContext, VisitableCommand) line: 63
InvocationContextInterceptor(AbstractVisitor).visitPutKeyValueCommand(InvocationContext, PutKeyValueCommand) line: 60
PutKeyValueCommand.acceptVisitor(InvocationContext, Visitor) line: 77
InterceptorChain.invoke(InvocationContext, VisitableCommand) line: 274
CacheDelegate<K,V>.put(K, V, long, TimeUnit, long, TimeUnit) line: 505
CacheLoaderManagerImpl.preload() line: 160
NativeMethodAccessorImpl.invoke0(Method, Object, Object[]) line: not available [native method]
NativeMethodAccessorImpl.invoke(Object, Object[]) line: not available
DelegatingMethodAccessorImpl.invoke(Object, Object[]) line: not available
Method.invoke(Object, Object...) line: not available
ReflectionUtil.invokeAccessibly(Object, Method, Object[]) line: 172
AbstractComponentRegistry$PrioritizedMethod.invoke() line: 908
ComponentRegistry(AbstractComponentRegistry).internalStart() line: 706
ComponentRegistry(AbstractComponentRegistry).start() line: 608
ComponentRegistry.start() line: 179
CacheDelegate<K,V>.start() line: 362
DefaultCacheManager.createCache(String) line: 548
DefaultCacheManager.getCache(String) line: 445
Main.main(String[]) line: 45