An EJB Jar with an glassfish-resources.xml references an jdbc/rt JNDI resource.
It's correctly read as java:app/jdbc/rt by the EJB package generated by maven but failed with Arquillian/ShrinkWrap targeting glassfish-remote-3.1

ShrinkWrap :

JavaArchive archive =
ShrinkWrap.create(JavaArchive.class, "Project-ejb-1.0.0-SNAPSHOT.jar")
.addPackages(true, "com.company.project.ejb.entities")
.addPackages(true, "com.company.project.ejb.model")
.addAsManifestResource("META-INF/ejb-jar.xml", ArchivePaths.create("ejb-jar.xml"))
.addAsManifestResource("META-INF/sun-ejb-jar.xml", ArchivePaths.create("sun-ejb-jar.xml"))
.addAsManifestResource("META-INF/glassfish-resources-test.xml", ArchivePaths.create("glassfish-resources.xml"))
.addAsManifestResource("META-INF/persistence-test.xml", ArchivePaths.create("persistence.xml"));

persistence.xml :

<?xml version="1.0" encoding="UTF-8"?>
<persistence version="1.0" xmlns="http://java.sun.com/xml/ns/persistence" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://java.sun.com/xml/ns/persistence http://java.sun.com/xml/ns/persistence/persistence_1_0.xsd">
<persistence-unit name="RTUnit" transaction-type="JTA">
<provider>org.eclipse.persistence.jpa.PersistenceProvider</provider>

<jta-data-source>java:app/jdbc/rt</jta-data-source>

<exclude-unlisted-classes>false</exclude-unlisted-classes>
</persistence-unit>

</persistence>